fix: all imports updated to cortex.xxx namespace — 405 tests green

- Fixed bare 'from governance.' imports in source + tests
- Fixed bare 'from intelligence.' imports in tests
- Fixed mock.patch targets to use full cortex.xxx paths
- All 405 tests passing

cortex/governance/cli.py

@@ -45,20 +45,20 @@ def _build_context(args: argparse.Namespace) -> dict:
 
 
 def _get_engine():
-    from governance.policy import PolicyEngine
+    from cortex.governance.policy import PolicyEngine
     return PolicyEngine(policies_dir=DEFAULT_POLICIES_DIR)
 
 
 def _get_scorer():
-    from governance.risk_scorer import RiskScorer
+    from cortex.governance.risk_scorer import RiskScorer
     return RiskScorer()
 
 
 def _get_enforcer():
-    from governance.enforcer import Enforcer
+    from cortex.governance.enforcer import Enforcer
-    from governance.policy import PolicyEngine
+    from cortex.governance.policy import PolicyEngine
-    from governance.risk_scorer import RiskScorer
+    from cortex.governance.risk_scorer import RiskScorer
-    from governance.evidence import EvidenceCollector, ControlMapping
+    from cortex.governance.evidence import EvidenceCollector, ControlMapping
 
     return Enforcer(
         policy_engine=PolicyEngine(policies_dir=DEFAULT_POLICIES_DIR),
@@ -150,8 +150,8 @@ def cmd_status(args: argparse.Namespace) -> None:
 
 def cmd_report(args: argparse.Namespace) -> None:
     """Generate compliance report (placeholder — needs live evidence)."""
-    from governance.evidence import EvidenceCollector, ControlMapping
+    from cortex.governance.evidence import EvidenceCollector, ControlMapping
-    from governance.report_generator import ReportGenerator
+    from cortex.governance.report_generator import ReportGenerator
 
     collector = EvidenceCollector(
         control_mapping=ControlMapping(DEFAULT_CONTROLS_MAPPING)

cortex/governance/enforcer.py

@@ -10,9 +10,9 @@ import logging
 from dataclasses import dataclass
 from typing import Any
 
-from governance.evidence import EvidenceCollector
+from cortex.governance.evidence import EvidenceCollector
-from governance.policy import PolicyEngine
+from cortex.governance.policy import PolicyEngine
-from governance.risk_scorer import RiskResult, RiskScorer
+from cortex.governance.risk_scorer import RiskResult, RiskScorer
 
 logger = logging.getLogger(__name__)
 

cortex/governance/report_generator.py

@@ -13,7 +13,7 @@ from dataclasses import dataclass
 from datetime import datetime, timezone
 from typing import Any
 
-from governance.evidence import EvidenceCollector, EvidenceRecord
+from cortex.governance.evidence import EvidenceCollector, EvidenceRecord
 
 logger = logging.getLogger(__name__)
 

tests/test_governance_enforcer.py

@@ -8,10 +8,10 @@ import pytest
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core"))
 
-from governance.enforcer import Enforcer, Decision
+from cortex.governance.enforcer import Enforcer, Decision
-from governance.policy import PolicyEngine
+from cortex.governance.policy import PolicyEngine
-from governance.risk_scorer import RiskScorer
+from cortex.governance.risk_scorer import RiskScorer
-from governance.evidence import EvidenceCollector, ControlMapping
+from cortex.governance.evidence import EvidenceCollector, ControlMapping
 
 
 def _make_enforcer(tmp_path, rules=None):

tests/test_governance_evidence.py

@@ -9,7 +9,7 @@ import pytest
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core"))
 
-from governance.evidence import EvidenceCollector, EvidenceRecord, ControlMapping
+from cortex.governance.evidence import EvidenceCollector, EvidenceRecord, ControlMapping
 
 
 class TestControlMapping:

tests/test_governance_report.py

@@ -6,8 +6,8 @@ from pathlib import Path
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core"))
 
-from governance.evidence import EvidenceCollector, ControlMapping
+from cortex.governance.evidence import EvidenceCollector, ControlMapping
-from governance.report_generator import ReportGenerator
+from cortex.governance.report_generator import ReportGenerator
 
 
 class TestReportGenerator:

tests/test_governance_risk_scorer.py

@@ -5,7 +5,7 @@ from pathlib import Path
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core"))
 
-from governance.risk_scorer import RiskScorer, RiskResult, _classify_level
+from cortex.governance.risk_scorer import RiskScorer, RiskResult, _classify_level
 
 
 class TestClassifyLevel:

tests/test_knowledge_cleanup.py

@@ -9,7 +9,7 @@ from unittest.mock import patch, MagicMock
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core" / "intelligence"))
 
-import knowledge_cleanup as kc
+import cortex.intelligence.knowledge_cleanup as kc
 
 
 class TestBackup:
@@ -107,28 +107,28 @@ class TestScoreRelationships:
 
 
 class TestClassifyUnknowns:
-    @patch("knowledge_cleanup.ollama_generate")
+    @patch("cortex.intelligence.knowledge_cleanup.ollama_generate")
     def test_no_unknowns(self, mock_ollama):
         entities = {"albert": {"type": "person"}}
         result = kc.classify_unknowns(entities, dry_run=False)
         mock_ollama.assert_not_called()
         assert result == entities
 
-    @patch("knowledge_cleanup.ollama_generate")
+    @patch("cortex.intelligence.knowledge_cleanup.ollama_generate")
     def test_classifies_unknowns(self, mock_ollama):
         mock_ollama.return_value = '{"1": "person"}'
         entities = {"albert": {"type": "unknown"}}
         result = kc.classify_unknowns(entities, dry_run=False)
         assert result["albert"]["type"] == "person"
 
-    @patch("knowledge_cleanup.ollama_generate")
+    @patch("cortex.intelligence.knowledge_cleanup.ollama_generate")
     def test_dry_run_no_change(self, mock_ollama):
         mock_ollama.return_value = '{"1": "person"}'
         entities = {"albert": {"type": "unknown"}}
         result = kc.classify_unknowns(entities, dry_run=True)
         assert result["albert"]["type"] == "unknown"
 
-    @patch("knowledge_cleanup.ollama_generate")
+    @patch("cortex.intelligence.knowledge_cleanup.ollama_generate")
     def test_handles_llm_failure(self, mock_ollama):
         mock_ollama.side_effect = Exception("timeout")
         entities = {"albert": {"type": "unknown"}}

tests/test_knowledge_extractor.py

@@ -6,7 +6,7 @@ from unittest.mock import patch
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core"))
 
-from knowledge_extractor import importance_heuristic, parse_since
+from cortex.knowledge_extractor import importance_heuristic, parse_since
 
 
 class TestImportanceHeuristic:

tests/test_llm_extractor.py

@@ -7,7 +7,7 @@ from unittest.mock import patch, MagicMock
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core" / "intelligence"))
 
-from llm_extractor import (
+from cortex.intelligence.llm_extractor import (
     _parse_json_response,
     _normalize_entities,
     extract_entities_llm,
@@ -83,26 +83,26 @@ class TestNormalizeEntities:
 
 
 class TestExtractEntitiesLlm:
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_empty_text(self, mock_ollama):
         assert extract_entities_llm("") == {}
         assert extract_entities_llm("short") == {}
         mock_ollama.assert_not_called()
 
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_ollama_unavailable(self, mock_ollama):
         mock_ollama.return_value = None
         result = extract_entities_llm("This is a test about Albert and Mondo Gate AG")
         assert result is None  # signals fallback
 
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_successful_extraction(self, mock_ollama):
         mock_ollama.return_value = '{"albert": {"type": "person", "context": "mentioned"}}'
         result = extract_entities_llm("Albert discussed the project with the team members today")
         assert "albert" in result
         assert result["albert"]["type"] == "person"
 
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_truncates_long_text(self, mock_ollama):
         mock_ollama.return_value = "{}"
         extract_entities_llm("x" * 3000)
@@ -112,19 +112,19 @@ class TestExtractEntitiesLlm:
 
 
 class TestExtractEntitiesLlmBatch:
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_empty_list(self, mock_ollama):
         assert extract_entities_llm_batch([]) == {}
         mock_ollama.assert_not_called()
 
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_filters_short_texts(self, mock_ollama):
         mock_ollama.return_value = "{}"
         result = extract_entities_llm_batch(["hi", "yo", ""])
         assert result == {}
         mock_ollama.assert_not_called()
 
-    @patch("llm_extractor._call_ollama")
+    @patch("cortex.intelligence.llm_extractor._call_ollama")
     def test_batch_extraction(self, mock_ollama):
         mock_ollama.return_value = '{"python": {"type": "technology", "context": "language"}}'
         result = extract_entities_llm_batch(["Python is a great programming language for data science"])
@@ -132,7 +132,7 @@ class TestExtractEntitiesLlmBatch:
 
 
 class TestIsAvailable:
-    @patch("llm_extractor.urllib.request.urlopen")
+    @patch("cortex.intelligence.llm_extractor.urllib.request.urlopen")
     def test_available(self, mock_urlopen):
         mock_resp = MagicMock()
         mock_resp.status = 200
@@ -141,7 +141,7 @@ class TestIsAvailable:
         mock_urlopen.return_value = mock_resp
         assert is_available() is True
 
-    @patch("llm_extractor.urllib.request.urlopen")
+    @patch("cortex.intelligence.llm_extractor.urllib.request.urlopen")
     def test_unavailable(self, mock_urlopen):
         mock_urlopen.side_effect = Exception("connection refused")
         assert is_available() is False

tests/test_loop.py

@@ -9,7 +9,7 @@ from unittest.mock import patch, MagicMock
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core" / "intelligence"))
 
-import loop as darkplex_loop
+import cortex.intelligence.loop as darkplex_loop
 
 
 class TestImportance:
@@ -101,19 +101,19 @@ class TestLoopState:
 
 
 class TestCheckNewEvents:
-    @patch("loop.subprocess.run")
+    @patch("cortex.intelligence.loop.subprocess.run")
     def test_returns_pending(self, mock_run):
         mock_run.return_value = MagicMock(
             returncode=0, stdout=json.dumps({"num_pending": 42})
         )
         assert darkplex_loop.check_new_events() == 42
 
-    @patch("loop.subprocess.run")
+    @patch("cortex.intelligence.loop.subprocess.run")
     def test_returns_negative_on_failure(self, mock_run):
         mock_run.return_value = MagicMock(returncode=1, stdout="")
         assert darkplex_loop.check_new_events() == -1
 
-    @patch("loop.subprocess.run")
+    @patch("cortex.intelligence.loop.subprocess.run")
     def test_handles_exception(self, mock_run):
         mock_run.side_effect = Exception("nats not found")
         assert darkplex_loop.check_new_events() == -1

tests/test_temporal.py

@@ -9,7 +9,7 @@ import pytest
 
 sys.path.insert(0, str(Path.home() / "repos" / "darkplex-core" / "intelligence"))
 
-from temporal import TemporalEntry, TemporalQuery, TemporalContext
+from cortex.intelligence.temporal import TemporalEntry, TemporalQuery, TemporalContext
 
 
 class TestTemporalEntry: